Subject: [PATCH python-team 00/26] Some further updates
From: Nicolas Graves <[email-masked]>
To: [email-masked]
Cc: Nicolas Graves <[email-masked]>
Date: Mon, 31 Mar 2025 08:13:39 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

Some new updates I managed to get to build this wkend. 

Nicolas Graves (26):
  gnu: python-zeroc-ice: Update to 3.7.10.1.
  gnu: python-cchardet: Update to 2.2.0a2.
  gnu: python-databricks-cli: Update to 0.18.0.
  gnu: python-jsonargparse: Update to 4.37.0.
  gnu: python-pyvcf: Use the fork python-pyvcf3.
  gnu: Remove python-parameterizedtestcase.
  gnu: Remove python-anyjson.
  gnu: python-pyquery: Update to 2.0.1.
  gnu: python-locust: Update to 2.33.2.
  gnu: rseqc: Switch to pyproject-build-system.
  gnu: seqmagick: Update to 0.8.6-0.dee6ab9.
  gnu: Remove python-pyfasta.
  gnu: taxtastic: Update to 0.11.1.
  gnu: python-rstr: Update to 3.2.2. Enable tests.
  gnu: reprotest: Update to 0.7.29.
  gnu: python-sip: Update to 6.10.0.
  gnu: Add python-pybktree.
  gnu: umi-tools: Update to 1.1.6.
  gnu: cpplint: Update to 2.0.0.
  gnu: python-patch-ng: Update to 1.18.1.
  gnu: veusz: Update to 3.6.2.
  gnu: conan: Update to 2.7.1.
  gnu: python-cu2qu: Fix tests.
  gnu: libei: Update to 1.4.0.
  gnu: openmolar: Fix build.
  gnu: python-mechanize: Update to 0.4.10.

 gnu/packages/backup.scm                       |   4 +-
 gnu/packages/benchmark.scm                    |  33 ++-
 gnu/packages/bioinformatics.scm               | 262 +++++++-----------
 gnu/packages/cpp.scm                          |  11 +-
 gnu/packages/diffoscope.scm                   |   4 +-
 gnu/packages/fontutils.scm                    |   7 +-
 gnu/packages/freedesktop.scm                  |  19 +-
 gnu/packages/maths.scm                        |  73 ++---
 gnu/packages/medical.scm                      |  32 ++-
 gnu/packages/package-management.scm           | 139 +++++-----
 .../patches/python-sip-include-dirs.patch     |  17 +-
 gnu/packages/python-check.scm                 |  19 --
 gnu/packages/python-web.scm                   |  18 +-
 gnu/packages/python-xyz.scm                   | 159 ++++++-----
 gnu/packages/qt.scm                           |  16 +-
 15 files changed, 407 insertions(+), 406 deletions(-)

-- 
2.49.0