Subject: [PATCH] gnu: Add r-rnacrosslinkoo.
From: "Afkhami, Navid" <[email-masked]>
To: <[email-masked]>
Cc: "Afkhami, Navid" <[email-masked]>
Date: Mon, 3 Jun 2024 15:18:44 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (r-rnacrosslinkoo): New variable.

Change-Id: I1ca6dcef9c093627c3743d1176e587cf40053ba0
---
 gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cdda029809..afdf818b07 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13915,6 +13915,50 @@ (define-public r-raremetals2
 trait.")
     (license license:gpl3)))
 
+(define-public r-rnacrosslinkoo
+  (let ((commit "a317e0fa6ddf34c309529d57390769e2b2b5bfb7")
+        (revision "1"))
+    (package
+      (name "r-rnacrosslinkoo")
+      (version (git-version "0.1.3" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/cran/rnaCrosslinkOO")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0csv9924z0ish960k034qzv3gxh1yabnxni8hsrn5j6xl1r3cdpl"))))
+      (properties `((upstream-name . "rnaCrosslinkOO")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-classdiscovery
+                               r-doparallel
+                               r-foreach
+                               r-genomicranges
+                               r-ggplot2
+                               r-ggrepel
+                               r-heatmap3
+                               r-igraph
+                               r-iranges
+                               r-mass
+                               r-mixtools
+                               r-patchwork
+                               r-r4rna
+                               r-rcolorbrewer
+                               r-reshape2
+                               r-rrna
+                               r-s4vectors
+                               r-seqinr
+                               r-tidyverse
+                               r-topdom))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/cran/rnaCrosslinkOO")
+      (synopsis "Analysis of RNA crosslinking data")
+      (description
+       "The package is ideal for analyzing RNA structure and chemical probing data.")
+      (license license:gpl3))))
+
 (define-public r-rnaseqdtu
   (let ((commit "5bee1e769d2e1dc6a3f1cecb78078050eeb5b9ac")
         (revision "1"))

base-commit: 1615084a9a4115d48b75b3db048761e7534efc87
prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d
prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b
prerequisite-patch-id: 23c7f331c5a70d80ff65f3b52bd29d19d87c5b8d
prerequisite-patch-id: a5f9464498560b3ba9ddb894482fc48a3a472d74
-- 
2.34.1